Stefan Bekiranov

Education

  • BS, University of California, Los Angeles
  • PhD, University of California, Santa Barbara
  • Postdoc, University of Maryland
  • Postdoc, The Rockefeller University

Primary Appointment

  • Associate Professor, Biochemistry and Molecular Genetics

Contact

Research Interest(s)

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Research Description

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Selected Publications

  • Cohen J, Tewalt E, Rouhani S, Buonomo E, Bruce A, Xu X, Bekiranov S, Fu Y, Engelhard V. Tolerogenic properties of lymphatic endothelial cells are controlled by the lymph node microenvironment. PloS one. 2014;9(2): e87740. PMID: 24503860 | PMCID: PMC3913631
  • Poorey K, Viswanathan R, Carver M, Karpova T, Cirimotich S, McNally J, Bekiranov S, Auble D. Measuring chromatin interaction dynamics on the second time scale at single-copy genes. Science (New York, N.Y.). 2013;342(6156): 369-72. PMID: 24091704 | PMCID: PMC3997053
  • McCullough S, Xu X, Dent S, Bekiranov S, Roeder R, Grant P. Reelin is a target of polyglutamine expanded ataxin-7 in human spinocerebellar ataxia type 7 (SCA7) astrocytes. Proceedings of the National Academy of Sciences of the United States of America. 2012;109(52): 21319-24. PMID: 23236151 | PMCID: PMC3535616
  • Hoang S, Xu X, Bekiranov S. Quantification of histone modification ChIP-seq enrichment for data mining and machine learning applications. BMC research notes. 2011;4 288. PMID: 21834981 | PMCID: PMC3170335
  • Smith S, Havaleshko D, Moon K, Baras A, Lee J, Bekiranov S, Burke D, Theodorescu D. Use of yeast chemigenomics and COXEN informatics in preclinical evaluation of anticancer agents. Neoplasia (New York, N.Y.). 2011;13(1): 72-80. PMID: 21253455 | PMCID: PMC3023847
  • Matecic M, Smith D, Pan X, Maqani N, Bekiranov S, Boeke J, Smith J. A microarray-based genetic screen for yeast chronological aging factors. PLoS genetics. 2010;6(4): e1000921. PMID: 20421943 | PMCID: PMC2858703
  • Xu X, Hoang S, Mayo M, Bekiranov S. Application of machine learning methods to histone methylation ChIP-Seq data reveals H4R3me2 globally represses gene expression. BMC bioinformatics. 2010;11 396. PMID: 20653935 | PMCID: PMC2928206
  • Kim Y, Bekiranov S, Lee J, Park T. Double error shrinkage method for identifying protein binding sites observed by tiling arrays with limited replication. Bioinformatics (Oxford, England). 2009;25(19): 2486-91. PMID: 19667080 | PMCID: PMC2800349
  • Wade S, Poorey K, Bekiranov S, Auble D. The Snf1 kinase and proteasome-associated Rad23 regulate UV-responsive gene expression. The EMBO journal. 2009;28(19): 2919-31. PMID: 19680226 | PMCID: PMC2760106
  • Park T, Kim Y, Bekiranov S, Lee J. Error-pooling-based statistical methods for identifying novel temporal replication profiles of human chromosomes observed by DNA tiling arrays. Nucleic acids research. 2007;35(9): e69. PMID: 17430969 | PMCID: PMC1888820
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