- PhD, Case Western Reserve University, Cleveland, OH
- Postdoc, Yale University, New Haven, CT
- BS, University of Science and Technology of China, China
- Assistant Professor, Pathology
Gene regulation in cancer, development and reproductive systems; Epigenetic modification.
Our research focuses on chimeric RNA in cancer and normal cells. Gene fusion is a common feature of cancer. The fusion products were believed to be unique to cancer cells until recently we demonstrated that abundant level of fusion products can also be present in normal cells. In these normal cells, the fusion products are made by a post-transcriptional process called “trans-splicing” to serve important functions.Our long-term hypotheses are that such trans-splicings are more than rare events and they play critical roles in normal physiology. In addition, mis-regulated trans-splicing machinery could generate highly abundant fusion products, which would promote oncogenesis the same way as the products made by traditional chromosomal rearrangements.To discover more RNA trans-splicing events, we propose two approaches, a candidate gene approach and a genome-wide approach. The candidate gene approach would focus on the known gene fusions associated with chromosomal translocations in various tumors. We predict that at least some of the fusion products can also be detected in the normal corresponding cells at certain conditions. The key is “when” and “where” to look for such events. We are applying stem cell differentiation approach to uncover these previously believed to be “cancer specific” fusions. For the genome-wide approach, we are using paired-end RNA-seq and several software tools to uncover novel fusion events and to document the whole transcriptome trans-splicing events in the cells of interest. Gain of function and loss of function approaches will be used to study the effect of the trans-spliced chimeric products on cancer development.
Another way to generate chimeric RNA between neighboring genes transcribing in the sdame direction is what we called “cis-splicing of adjacent genes” (cis-SAGe). It happens as if the gene boundaries do not exist. We are againing using RNA-seq and bioinformatics tools to finding more of cis-SAGe events.
Some of the fusions we found are promised to be ideal biomarkers and/or therapeutic targets.
- Yuan H, Qin F, Movassagh M, Park H, Golden W, Xie Z, Zhang P, Sklar J, Li H. A chimeric RNA characteristic of rhabdomyosarcoma in normal myogenesis process. Cancer discovery. 2013;3(12): 1394-403. PMID: 24089019
- Zhang Y, Gong M, Yuan H, Park H, Frierson H, Li H. Chimeric Transcript Generated by cis-Splicing of Adjacent Genes Regulates Prostate Cancer Cell Proliferation. Cancer discovery. 2012;2(7): 598-607. PMID: 22719019
- Jazaeri A, Bryant J, Park H, Li H, Dahiya N, Stoler M, Ferriss J, Dutta A. Molecular requirements for transformation of fallopian tube epithelial cells into serous carcinoma. Neoplasia (New York, N.Y.). 2011;13(10): 899-911. PMID: 22028616 | PMCID: PMC3201567
- Li H, Wang J, Ma X, Sklar J. Gene fusions and RNA trans-splicing in normal and neoplastic human cells. Cell cycle (Georgetown, Tex.). 2009;8(2): 218-22. PMID: 19158498
- Li H, Wang J, Mor G, Sklar J. A neoplastic gene fusion mimics trans-splicing of RNAs in normal human cells. Science (New York, N.Y.). 2008;321(5894): 1357-61. PMID: 18772439
- Li H, Ma X, Wang J, Koontz J, Nucci M, Sklar J. Effects of rearrangement and allelic exclusion of JJAZ1/SUZ12 on cell proliferation and survival. Proceedings of the National Academy of Sciences of the United States of America. 2007;104(50): 20001-6. PMID: 18077430 | PMCID: PMC2148412
- Li H, Myeroff L, Smiraglia D, Romero M, Pretlow T, Kasturi L, Lutterbaugh J, Rerko R, Casey G, Issa J, Willis J, Willson J, Plass C, Markowitz S. SLC5A8, a sodium transporter, is a tumor suppressor gene silenced by methylation in human colon aberrant crypt foci and cancers. Proceedings of the National Academy of Sciences of the United States of America. 2003;100(14): 8412-7. PMID: 12829793 | PMCID: PMC166243
- Li H, Myeroff L, Kasturi L, Krumroy L, Schwartz S, Willson J, Stanbridge E, Casey G, Markowitz S. Chromosomal autonomy of hMLH1 methylation in colon cancer. Oncogene. 2002;21(9): 1443-9. PMID: 11857087
- Double Faced Estrogen Journal of Biomolecular Research & Therapeutics . 2.
- Jividen Kasey, Movassagh Mercedeh, Li Hui. Two Methods for Establishing Primary Human Endometrial Stromal Cells Journal of Visualized Experiments . .