- Biomedical Sciences Graduate Program | Ammasi Periasamy

Ammasi Periasamy

Primary Appointment

  • Professor of Research, Biology


Research Interest(s)

Imaging of Proteins in Living (or fixed) Cells and Tissues Using Light Microscopy Systems

Research Description

I designed and developed different light microscopy imaging systems to investigate cellular signaling such as calcium, pH, protein-protein interactions and also diagnostic system in clinical imaging. The system includes: Digitized video microscopy, digital deconvolution, confocal, multi-photon excitation, fluorescence lifetime (FLIM), time-resolved, anisotropy and fluorescence resonance energy transfer (FRET) microscopy. My current research area of interest is energy-based FLIM-FRET Microscopy and Spectroscopy in the determination of when and where specific proteins associate with one-another in living cells and tissues.

Through the use of conventional fluorescence microscopy, proteins labeled with different fluorophores can be localized within fixed or living cell preparations. The fluorophores absorb light at one wavelength and emit light at another, longer wavelength. By using appropriate filters, it is possible to detect several different labeled proteins in the same preparation. However, the optical resolution of the light microscope limits determination of protein proximities to 0.2 micrometers. Resolving the relative proximities of proteins that exceeds the optical limit of the microscope is necessary to reveal the physical interactions between protein partners. This degree of spatial resolution can only be achieved in energy-based imaging using the technique of fluorescence resonance energy transfer (FRET) and fluorescence lifetime imaging (FLIM) microscopy. FRET is a process by which radiation-less transfer of energy occurs from a fluorophore in the excited state to an acceptor molecule in close proximity. The range over which resonance energy transfer can occur is limited to ~ 0.01 micrometers and the efficiency of energy transfer is extraordinarily sensitive to the distance between fluorophores. The measurement of FRET in the microscope provides a non-invasive approach to visualize the spatio-temporal dynamics of the interactions between protein partners in the living cell.

The fluorescence lifetime is defined as the average time that a molecule remains in an excited state prior to returning to the ground state. Many currently available fluorescence microscopic techniques, such as confocal or multi-photon excitation, cannot provide detailed information about the organization and dynamics of complex cellular structures. In contrast, fluorescence lifetime imaging (FLIM) microscopy allows the measurement of dynamic events at very high temporal resolution and can monitor interactions between cellular components with very high spatial resolution as well. An important advantage of FLIM is that the absolute values of lifetimes are independent of the probe concentration, photobleaching, light scattering and the amount of excitation intensity. FLIM thus offers many opportunities for studying dynamic event of living cells.

A major obstacle to implementation of energy-based spectroscopy in living cells has been the lack of suitable methods for specifically labeling intracellular proteins with the appropriate fluorophores. The cloning of the jellyfish green fluorescent protein (GFP) and its expression in a wide variety of cell-types has proven this fluorescent protein to be a versatile marker for both gene expression and protein localization in living cells. When illuminated by blue light, the jellyfish GFP yields a bright green fluorescence that does not require any cofactors, substrates, or additional gene products. GFP retains its fluorescent properties when fused to other proteins, allowing energy-based microscopy to be used to visualize dynamic changes in protein localization in intact cells.

Selected Publications

  • Burdikova Z, Svindrych Z, Pala J, Hickey C, Wilkinson M, Panek J, Auty M, Periasamy A, Sheehan J. Measurement of pH micro-heterogeneity in natural cheese matrices by fluorescence lifetime imaging. Frontiers in microbiology. 2015;6 183. PMID: 25798136 | PMCID: PMC4351631
  • Rehman S, Gladman J, Periasamy A, Sun Y, Mahadevan M. Development of an AP-FRET based analysis for characterizing RNA-protein interactions in myotonic dystrophy (DM1). PloS one. 2014;9(4): e95957. PMID: 24781112 | PMCID: PMC4004549
  • Sun Y, Rombola C, Jyothikumar V, Periasamy A. Förster resonance energy transfer microscopy and spectroscopy for localizing protein-protein interactions in living cells. Cytometry. Part A : the journal of the International Society for Analytical Cytology. 2013;83(9): 780-93. PMID: 23813736 | PMCID: PMC3924896
  • Periasamy A, Shadiac N, Amalraj A, Garajová S, Nagarajan Y, Waters S, Mertens H, Hrmova M. Cell-free protein synthesis of membrane (1,3)-β-d-glucan (curdlan) synthase: Co-translational insertion in liposomes and reconstitution in nanodiscs. Biochimica et biophysica acta. 2012;1828(2): 743-57. PMID: 23063656
  • Sun Y, Hays N, Periasamy A, Davidson M, Day R. Monitoring protein interactions in living cells with fluorescence lifetime imaging microscopy. Methods in enzymology. 2012;504 371-91. PMID: 22264545
  • Sun Y, Day R, Periasamy A. Investigating protein-protein interactions in living cells using fluorescence lifetime imaging microscopy. Nature protocols. 2011;6(9): 1324-40. PMID: 21886099 | PMCID: PMC3169422
  • Sun Y, Wallrabe H, Seo S, Periasamy A. FRET microscopy in 2010: the legacy of Theodor Förster on the 100th anniversary of his birth. Chemphyschem : a European journal of chemical physics and physical chemistry. 2011;12(3): 462-74. PMID: 21344587 | PMCID: PMC3422661
  • Williams M, Burdsal C, Periasamy A, Lewandoski M, Sutherland A. Mouse primitive streak forms in situ by initiation of epithelial to mesenchymal transition without migration of a cell population. Developmental dynamics : an official publication of the American Association of Anatomists. 2011;241(2): 270-83. PMID: 22170865 | PMCID: PMC3266444